In 1888, he visited Aruvippuram and spent time meditating in a cave near the Neyyar River. It was here that his first and one of his prominent disciple, Sivalingadasa Swamikal, who hailed from an orthodox Nair family, discovered him. During his stay, he consecrated a rock from the deepest part of the Neyyar River, a whirlpool sinkhole known as ‘Sankaran Kuzhi’. It is believed that it was in this ‘Sankaran Kuzhi’ sage Agastya gave his worshipping Shiva Linga to Neyyar river somewhere before leaving. This rock was established as the idol of Shiva, and the site has since been known as the Aruvippuram Shiva Temple.[10][11][verification needed] The act, which later came to be known as Aruvipuram Pratishta, created a social commotion among the upper caste Brahmins who questioned Guru’s right to consecrate the idol.[12] His reply to them that “This is not a Brahmin Shiva but an Ezhava Shiva[13] later became a famous quote, used against casteism.[14][15] It was here, the Sree Narayana Dharma Paripalana Yogam (SNDP Yogam)[16] was founded on 15 May 1903 by the efforts of Padmanabhan Palpu with Narayana Guru as its founder president.[17]

Guru shifted his base to Sivagiri, near Varkala in 1904 where he opened a school for children from the lower strata of the society and provided free education to them without considering their caste. However, it took him seven years to build[6][non-primary source needed] a temple there, the Sarada Mutt was built in 1912. He also built temples in other places such as ThrissurKannurAnchuthenguThalasseryKozhikode, and Mangalore and it took him to many places including Sri Lanka (then called Ceylon) where he made his final visit in 1926. On his return to India, he was involved in a number of activities including the planning of the Sivagiri pilgrimage which was planned after his visit to Pallathuruthy in 1927 to attend the anniversary of the S.N.D.P. Yogam.[6][non-primary source needed]

Soon after the meeting at Pallathuruthy, which was the last public function he attended, Guru became ill and underwent treatment at places such as Aluva, Thrissur, Palakkad, and finally to Chennai; the physicians attended to him included Ayurvedic physicians like Cholayil Mami Vaidyar, Panappally Krishnan Vaidyar and Thycauttu Divakaran Moos as well as allopathic physicians viz. . Krishnan Thampi, Panikker, Palpu and a European physician by name, Noble. He returned to Sarada Mutt and died on 20 September 1928, at the age of 72.

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